Guide

AI agents in document workflows – how they automate work with contracts, orders and invoices

This article is for owners, COOs, CFOs and office managers in companies where documents arrive by email, circulate between departments and wait for signatures. We explain what an AI agent adds to an ordinary document workflow and how to build such a workflow in Microsoft 365. We also show which documents are worth handing over to it now that KSeF, Poland’s National e-Invoicing System, is in place.

Author: Kacper Włodarczyk, CEO of ALGORCOMPPublished: May 12, 2026Reading time: 10 min readAI / AI agentsFor: Mid-sized company
AI agent-driven document workflow in the Microsoft environment

What an AI agent adds to an ordinary document workflow

A traditional electronic document workflow sends a file along a set path: from reception to the department, from the manager to the director. However, it does not understand the content. Someone still has to read the document, recognise its type, retype the data and decide where to send it.

This is exactly the work an AI agent takes over. The list below shows a document’s journey and the points where the agent helps. Approval and saving to the system work as in an ordinary workflow, only without the manual preparation of the case.

  • Intake: the document arrives by email in a shared mailbox, through a form, from a supplier portal or from a scanner.
  • Type recognition: the agent tells an order from a complaint, a contract from an amendment, an invoice from a debit or credit note.
  • Data extraction: the document is turned into a set of fields, such as customer, line items, quantities, amounts and dates.
  • Checking: the agent compares the data with the company’s system, for example prices with the price list, quantities with the order and the business partner with the customer database.
  • Preparing the decision: the agent routes the case to the right person with a short description and any discrepancies highlighted.
  • Saving and archiving: after the decision, the data goes into the system, and the document, with its approval history, into a SharePoint library.

Which documents are worth handing over to an agent now that KSeF is in place

KSeF has changed the picture for invoices. Most invoices from Polish suppliers now arrive through the state system as data in fixed fields, so they do not need to be read from a scan. An agent can still help describe and check them, but reading them is no longer a problem.

Most of the remaining work is with documents that arrive in any format. The table below sorts the typical documents of a mid-sized company by what an agent can realistically do with them.

Typical documents and the role of an AI agent
DocumentWhere it comes fromWhat the agent doesNote
Invoices from Polish suppliersKSeFSuggests the ledger account and cost centre, compares with the purchase orderThe data is already structured, so no reading is needed
Foreign invoices, receipts, travel billsEmail, photo, scanReads the data and prepares it for postingNeeds checking by an accountant
Customer ordersEmail with a PDF or Excel fileReads the line items, checks prices and availability, prepares the order in the systemA salesperson approves any discrepancies with the price list
Contracts from business partnersEmail, portalCompares them with the company’s template and flags changed clausesThe legal assessment is done by a lawyer
Complaints and letters from customersEmail, formRecognises the subject, assigns it to a department, drafts a replyAn employee sends the reply
Internal requests (leave, equipment, purchases)Email, paperUsually not needed – better replaced with a formA form provides structured data straight away
AI agent architecture for document workflow automation

How to build such a workflow in Microsoft 365

A company that works in Microsoft 365 does not need to buy a separate document platform. The elements in the list below can be combined into a single workflow, and documents stay in SharePoint, where employees already look for them.

A practical point concerns approvals. A single Power Automate flow run lasts a maximum of 30 days, so a document that waits longer drops out of the workflow. That is why reminders and deputies need to be planned from the start, not after the first cases go missing.

  • SharePoint: a document library with columns describing each file, such as type, business partner, amount and status. Autofill columns can fill them in automatically based on the file’s content.
  • AI Builder: a Power Automate module with ready-made models for reading invoices and receipts, and the option of preparing your own model for an unusual document.
  • Power Automate: Microsoft’s tool for connecting applications, which takes a document through the successive steps and sends approval requests to Teams or Outlook.
  • Copilot Studio: a tool for building an agent that employees can talk to, for example to ask about a contract’s status or request a comparison of a document with the template.
  • Connection to the company’s system: saving data in the ERP or CRM through a ready-made connector or that system’s data exchange interface (API).

Where decisions must stay with people

An agent will sometimes misread a number, confuse the type of document or miss an unusual clause. That is why the rules for handing a case over to a person must be agreed before launch. Three thresholds are most common: low reading confidence, an amount above the limit, and a mismatch with the order or price list.

Take a hypothetical distribution company with 80 employees that receives 600 orders a month by email. Let us estimate that entering one manually takes 7 minutes, which is 4,200 minutes, or about 70 hours a month. If the agent prepares the orders and a salesperson checks each one in 2 minutes, that is 1,200 minutes, or 20 hours.

The difference is about 50 hours a month. Plug in your own figures: the number of documents, the measured handling time and a realistic checking time. Add to the costs the licences, preparation, and the time of the person who reviews the agent’s errors each month.

Diagram of a document workflow with an AI agent: intake, type recognition, data extraction, checking, approval and archive

An AI agent does not speed up a document workflow on its own. It only does so once it is clear who makes the decision, by when and according to what rules.

Security and regulations: the data in documents is sensitive

Documents contain personal data, prices, contract terms and financial data. The agent must therefore work within the same rules as the rest of the company’s systems, not alongside them. The list below sets out the settings you need to prepare.

Retention is a separate matter. Accounting documents and contracts have statutory retention periods, and the agent must not delete or change them after approval. Retention policies in Microsoft Purview, the data protection tool in Microsoft 365, let you enforce this for an entire library.

  • Permissions: the agent and flows run on an account with access only to the libraries they need.
  • Sensitivity labels: contracts, HR documents and financial data are labelled, and policies in Microsoft Purview exclude them from AI assistants’ answers where necessary. These policies have to be created; they are not switched on by default.
  • Decision trail: each document has a record of what the agent read, who approved it, what they corrected and when.
  • GDPR: if documents contain personal data, the AI service provider must have a data processing agreement (DPA) with the company.
  • Employee knowledge: since 2 February 2025, the AI Act (Article 4) has required companies to take steps to build employees’ knowledge of AI. In a document workflow, this means, among other things, that everyone knows when the agent’s reading needs checking.

Do you need several agents working together?

You may come across a proposal for one agent to recognise the document, a second to read the data, a third to check compliance and a fourth to coordinate everything. Such a setup makes sense with very varied documents and many systems. In a mid-sized company it is usually overkill.

Each additional agent is one more place where something can go wrong, and one more thing to maintain. For a first workflow, a single agent, or even a single Power Automate flow with an AI Builder model, is enough. Only consider expanding once the workflow is running and you know its weak points.

Where to start

The safest start is one document type, one approval path and one connection to a system. This scope lets you measure the results quickly without bringing the department to a halt if something does not work. The list below describes the steps.

  • Step 1: count the documents from the last three months by type and source. Check how many invoices already arrive through KSeF.
  • Step 2: choose a document type with high volume and varied formats, such as customer orders or foreign invoices.
  • Step 3: write down the rules: who approves, by when, who deputises, and when a case goes back to the sender.
  • Step 4: before you launch the agent, measure the time from a document’s arrival to a decision, and the percentage of documents with errors.
  • Step 5: launch the workflow for one department, check every reading for the first few weeks, and then only samples and cases flagged by the agent.

When an agent in a document workflow makes no sense

An agent is not needed when documents already arrive as structured data, like invoices from KSeF, or when they can be replaced with a form. Nor will it pay off with a few dozen documents a month that an employee handles in a few minutes.

The most common mistake is automating chaos. If nobody knows who approves contracts and by when, the agent will simply deliver the document to the wrong person faster. Start with the workflow rules, and choose the technology afterwards.

Related topics in the knowledge base

Read more about document workflows

FAQ

AI agents in document workflows – frequently asked questions

Questions that usually come up when planning a first AI-assisted document workflow.

Will an AI agent replace our electronic document management system?
No. The agent works on documents in your existing repository, most often SharePoint or the workflow system the company already uses. It adds an understanding of the content, but does not replace the document register, permissions and archive.
How accurately does the agent read data?
Accuracy depends on scan quality, the document layout and the language. Vendors do not give a single figure for all cases, so measure it yourself on a few dozen of your own documents before launch. Every low-confidence reading should go for checking.
Can the agent sign documents on the company’s behalf?
It should not. A signature, including an electronic one, confirms a declaration of intent by a person authorised to represent the company. The agent can prepare the document for signature, check it is complete and send it to the signatory, but a person makes the decision.
Does implementation require changing the ERP or CRM system?
Usually not. The agent saves data in the existing system through a ready-made connector or a data exchange interface. The trouble comes with older systems that have no such interface – then you need to plan an additional connection, which increases the cost.
What about paper documents?
They need to be scanned first, ideally in one place and following one naming convention. A good-quality scan greatly improves reading. If paper documents are only a small part of the workflow, it is sometimes cheaper to leave them for manual handling.

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About the author

Kacper Włodarczyk — CEO of ALGORCOMP

Kacper Włodarczyk

CEO of ALGORCOMP

Kacper specializes in implementing Microsoft 365 Copilot, Copilot Studio, Power Platform (Power Automate, Power Apps, SharePoint) and AI agents for mid-sized B2B companies in Poland. He leads dozens of projects covering AI strategy, Power Platform governance, document workflow automation and sales processes. In his writing he focuses on the practical side of AI adoption in organizations — from the first proof of concept to company-wide rollout — with particular attention to data security, compliance (GDPR, NIS2, the AI Act) and return on investment.

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